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Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2:

@yume@mi.yumechi.jp
misskey 2025.12.2-yumechinokuni.0
  • Open on mi.yumechi.jp
​:verifiedsabakan:​ いい夢を! 🌙

zh-CN alias: 饺子w

MS Bioinformatics, former infosec analyst. Do the right thing for users and run this instance into beyond commercial security standards, and keep Misskey safe in the mean time. (*・ω・)ノ

Topics cat likes to scratch:

- DTC medical marketing
- "Technical solutions" to social problems
- Flawed statisical modeling and/or risk assessment
- Fearmongering tactics

Rust/Haskell enjoyer. Maintainer of https://gotify.net/

Likes otome games | 喜欢玩乙游/乙番 (⁄ ⁄•⁄ω⁄•⁄ ⁄)

Does some montaineering. Platelet donor, do the right thing for those in need

(´。• ω •。`) 大切な仲間 @imgalvin@masto.ai@mi.yumechi.jp

sub: @_ZN4pari4yumeE@pari.cafe@mi.yumechi.jp (>95% ZH)

sub: @yumechi@misskey.flowers@mi.yumechi.jp (JA)
172 Followers
283 Following
3 Posts
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Posts

Open post
Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2: @yume@mi.yumechi.jp · Oct 27, 2024
Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2:
@yume@mi.yumechi.jp

​:verifiedsabakan:​ いい夢を! 🌙 zh-CN alias: 饺子w MS Bioinformatics, former infosec analyst. Do the right thing for users and run this instance into beyond commercial security standards, and keep Misskey safe in the mean time. (*・ω・)ノ Topics cat likes to scratch: - DTC medical marketing - "Technical solutions" to social problems - Flawed statisical modeling and/or risk assessment - Fearmongering tactics Rust/Haskell enjoyer. Maintainer of https://gotify.net/ Likes otome games | 喜欢玩乙游/乙番 (⁄ ⁄•⁄ω⁄•⁄ ⁄) Does some montaineering. Platelet donor, do the right thing for those in need (´。• ω •。`) 大切な仲間 @imgalvin@masto.ai sub: @_ZN4pari4yumeE@pari.cafe (>95% ZH) sub: @yumechi@misskey.flowers (JA)

mi.yumechi.jp
Refining my #nextflow #cuda #GPU process for #bioinformatics , does anyone have some pointers on how to:

- Assign individual GPU IDs to docker run? The process only uses one GPU but the server may have multiple GPUs, how does each sample know which GPU ID to use?
- Is there an established way to detect CUDA versions and choose the right image? I wrote a pipeline to build and tag for every possible version but not sure how to make it happen on nextflow. https://hub.docker.com/r/l1drm/dreg/

I partially solved (2) by a hack:

https://github.com/Functional-Genomics-Lab/dREG-nf/blob/main/modules/local/dreg/main.nf

https://github.com/Functional-Genomics-Lab/dREG-nf/blob/main/bin/cuda_version.sh
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Open post
Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2: @yume@mi.yumechi.jp · Oct 05, 2024
Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2:
@yume@mi.yumechi.jp

​:verifiedsabakan:​ いい夢を! 🌙 zh-CN alias: 饺子w MS Bioinformatics, former infosec analyst. Do the right thing for users and run this instance into beyond commercial security standards, and keep Misskey safe in the mean time. (*・ω・)ノ Topics cat likes to scratch: - DTC medical marketing - "Technical solutions" to social problems - Flawed statisical modeling and/or risk assessment - Fearmongering tactics Rust/Haskell enjoyer. Maintainer of https://gotify.net/ Likes otome games | 喜欢玩乙游/乙番 (⁄ ⁄•⁄ω⁄•⁄ ⁄) Does some montaineering. Platelet donor, do the right thing for those in need (´。• ω •。`) 大切な仲間 @imgalvin@masto.ai sub: @_ZN4pari4yumeE@pari.cafe (>95% ZH) sub: @yumechi@misskey.flowers (JA)

mi.yumechi.jp
Replying to @ryanmcshane@fosstodon.org
@ryanmcshane@fosstodon.org r$> getParseData(parse(text = "a = 1; f(a, x = 1)")) line1 col1 line2 col2 id parent token terminal text 9 1 1 1 5 9 0 expr_or_assign_or_help FALSE 1 1 1 1 1 1 3 SYMBOL TRUE a 3 1 1 1 1 3 9 expr FALSE 2 1 3 1 3 2 9 EQ_ASSIGN TRUE = 5 1 5 1 5 5 6 NUM_CONST TRUE 1 6 1 5 1 5 6 9 expr FALSE 7 1 6 1 6 7 0 ';' TRUE ; 28 1 8 1 18 28 0 expr FALSE 11 1 8 1 8 11 13 SYMBOL_FUNCTION_CALL TRUE f 13 1 8 1 8 13 28 expr FALSE 12 1 9 1 9 12 28 '(' TRUE ( 14 1 10 1 10 14 16 SYMBOL TRUE a 16 1 10 1 10 16 28 expr FALSE 15 1 11 1 11 15 28 ',' TRUE , 20 1 13 1 13 20 28 SYMBOL_SUB TRUE x 21 1 15 1 15 21 28 EQ_SUB TRUE = 22 1 17 1 17 22 23 NUM_CONST TRUE 1 23 1 17 1 17 23 28 expr FALSE 24 1 18 1 18 24 28 ')' TRUE )
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Open post
Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2: @yume@mi.yumechi.jp · Oct 05, 2024
Yumechi | ゆめち :ferris: :haskell: :role_nyanpuppu2:
@yume@mi.yumechi.jp

​:verifiedsabakan:​ いい夢を! 🌙 zh-CN alias: 饺子w MS Bioinformatics, former infosec analyst. Do the right thing for users and run this instance into beyond commercial security standards, and keep Misskey safe in the mean time. (*・ω・)ノ Topics cat likes to scratch: - DTC medical marketing - "Technical solutions" to social problems - Flawed statisical modeling and/or risk assessment - Fearmongering tactics Rust/Haskell enjoyer. Maintainer of https://gotify.net/ Likes otome games | 喜欢玩乙游/乙番 (⁄ ⁄•⁄ω⁄•⁄ ⁄) Does some montaineering. Platelet donor, do the right thing for those in need (´。• ω •。`) 大切な仲間 @imgalvin@masto.ai sub: @_ZN4pari4yumeE@pari.cafe (>95% ZH) sub: @yumechi@misskey.flowers (JA)

mi.yumechi.jp
Replying to @ryanmcshane@fosstodon.org
@ryanmcshane@fosstodon.org @rstats@a.gup.pe@mi.yumechi.jp Not sure what is the common name for this but I did a static analysis on R packages in undergraduate project. I know in x(a = 1), = is parsed as EQ_SUB and x = 1 is parsed as EQ_ASSIGN, so I guess it implies it is called "call x substituting parameter a by 1" maybe?
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