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Flávia E. Rius

@flaviaerius@fosstodon.org
mastodon 4.6.6
  • Open on fosstodon.org

Data scientist @ Mendelics.
Post doc @ USP.
PhD in Epigenomics. 
BSc in Biomedical Sciences.

0 Followers
0 Following
5 Posts
Joined April 23, 2023
Blog:
https://flaviaerius.com
LinkedIn:
https://www.linkedin.com/in/fl%C3%A1via-eichemberger-rius-b5119770/

Posts

Open post
flaviaerius
Flávia E. Rius @flaviaerius@fosstodon.org · Jan 06, 2024
Flávia E. Rius
@flaviaerius@fosstodon.org

Data scientist @ Mendelics. Post doc @ USP.
PhD in Epigenomics. 
BSc in Biomedical Sciences.

fosstodon.org
Replying to @jonocarroll@fosstodon.org
@jonocarroll@fosstodon.org @teunbrand@fosstodon.org Now that I have created the package I've discovered about pacman because someone told me about it on twitter. Anyways, one thing I have different is the function for bioconductor, which should be helpful to my bio folks!
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Open post
flaviaerius
Flávia E. Rius @flaviaerius@fosstodon.org · Jan 06, 2024
Flávia E. Rius
@flaviaerius@fosstodon.org

Data scientist @ Mendelics. Post doc @ USP.
PhD in Epigenomics. 
BSc in Biomedical Sciences.

fosstodon.org
Replying to @teunbrand@fosstodon.org

@teunbrand@fosstodon.org rlang::check_installed() is interactive, which means you need to allow it to install the package, while loadinstall::dynamic_require() will install it right away (it may ask whether you want to update a/s/n packages though).

Furthermore, {loadinstall} has two other functions to load/install packages from github or bioconductor :)

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Open post
flaviaerius
Flávia E. Rius @flaviaerius@fosstodon.org · Jan 05, 2024
Flávia E. Rius
@flaviaerius@fosstodon.org

Data scientist @ Mendelics. Post doc @ USP.
PhD in Epigenomics. 
BSc in Biomedical Sciences.

fosstodon.org
Replying to @flaviaerius@fosstodon.org
Feedbacks are welcome! 3/3
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Open post
flaviaerius
Flávia E. Rius @flaviaerius@fosstodon.org · Jan 05, 2024
Flávia E. Rius
@flaviaerius@fosstodon.org

Data scientist @ Mendelics. Post doc @ USP.
PhD in Epigenomics. 
BSc in Biomedical Sciences.

fosstodon.org
Replying to @flaviaerius@fosstodon.org

Three simple functions:

  • CRAN: dynamic_require()
  • Github: github_dynamic_require()
  • Bioconductor: bioc_dynamic_require()

Check the README on github to understand better how it works, it's quite simple.

2/3

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Open post
flaviaerius
Flávia E. Rius @flaviaerius@fosstodon.org · Jan 05, 2024
Flávia E. Rius
@flaviaerius@fosstodon.org

Data scientist @ Mendelics. Post doc @ USP.
PhD in Epigenomics. 
BSc in Biomedical Sciences.

fosstodon.org

Tired of adding a chunk of code to check whether a package is installed or not in your env before loading?

I have created a package to do this!

{loadinstall} will load the R package if it is installed, and install + load if it is not.

https://github.com/flaviaerius/loadinstall

#rstats

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