Post #2895528
2026-05-13 20:47 UTC
Interesting, could you enlighten what types if data is in those 100 columns? I’m aware of ATGC and thought it would be just one column, but maybe the rest are some that indicate intensity or activity. Or what sequence they are part of.
Replies (1)
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@rockSlayer@lemmy.blahaj.zone 2026-05-13 21:03
Well it varies depending on what the file is meant for. Usually there's columns like chromosome, variant position, reference nucleotide, observed nucleotide, type of variation, codon sequence, gene name, etc. There's also columns that result from various analyses. In the file I've been working on lately, there are columns such as variant impact, level of confidence, pathogenicity, clinical significance, etc.